Setting Up for Experimental Success: Exploring the Importance of Pilot Studies

PIPseeker Software for Data Analysis

  • Analyze sequencing data from PIPseq™
    3′ Single Cell Gene Expression libraries
  • Obtain summary metrics, diagnostic plots, clustering and differential gene expression tables
  • Generate standard feature-barcode count matrices compatible with standard tertiary analysis packages
  • Compatible with Linux, macOS, and Windows


PIPseeker is available for download as a self-contained package. Common reference packages are also provided in the downloads page, and users can generate their own references as needed.

PIPseeker User Guide (PDF)